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PPD_002U73W.1

DENV-2/Vanuatu/Vanuatu-2020-139NM1108/2020
C. Inizan, O. O'Connor, G. Worwor, T. Cabemaiwai, J. C. Grignon, D. Girault, M. Minier, M. Prot, V. Ballan, G. J. Pakoa, J. P. Grangeon, P. Guyant, C. Lepers, D. Faktaufon, A. Sahukhan, O. E. Jr. Merilles, A. C. Gourinat, E. Simon-Loriere & M. Dupont-Rouzeyrol

Institut Pasteur in New Caledonia, Unite de Recherche et d'Expertise-Dengue et Arboviroses

Sample details

Collection date
2020
Sampling location
Vanuatu
Isolate name
Vanuatu-2020-139NM1108

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-10-03
NCBI update date
2020-10-03

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT799879.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:30:14 UTC
Earliest release date
2020-10-03

Lineage & Serotype

Lineage
2II_C.1
Serotype
DENV-2

Alignment and QC

Length
1885 (17.6%)
# of SNPs
122
# of unknown bases
1

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C654T
  • G657A
  • G675A
  • T678C
  • A682G
  • T686C
  • G687A
  • T696C
  • A702G
  • A744G
  • T759C
  • T797C
  • T807A
  • A817G
  • C837T
  • G843A
  • G876A
  • C893T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:H149N
  • E:K160T
  • E:I164V
  • E:N203D
  • E:T226K
  • E:V347A
  • E:I379V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

prM

  • prM:E72S
  • prM:S81T
  • prM:Q82A
  • prM:D89E
  • prM:A96V
  • prM:L101M
  • prM:Q119H
  • prM:I120A
  • prM:K122R
  • prM:V123I
  • prM:A127V
  • prM:V135I
  • prM:I136M
  • prM:L138A
  • prM:F139I
  • prM:H142Y
  • prM:A143T
  • prM:S147T
Deletions
N/A
Insertions
N/A

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