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PPD_002U75S.1

DENV-2/New_Caledonia/NewCaledonia-2020-8200620187/2020-03-02
C. Inizan, O. O'Connor, G. Worwor, T. Cabemaiwai, J. C. Grignon, D. Girault, M. Minier, M. Prot, V. Ballan, G. J. Pakoa, J. P. Grangeon, P. Guyant, C. Lepers, D. Faktaufon, A. Sahukhan, O. E. Jr. Merilles, A. C. Gourinat, E. Simon-Loriere & M. Dupont-Rouzeyrol

Institut Pasteur in New Caledonia, Unite de Recherche et d'Expertise-Dengue et Arboviroses

Sample details

Collection date
2020-03-02
Sampling location
New Caledonia
Isolate name
NewCaledonia-2020-8200620187

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-10-03
NCBI update date
2020-10-03

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT799881.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:30:14 UTC
Earliest release date
2020-10-03

Lineage & Serotype

Lineage
2II_C.1
Serotype
DENV-2

Alignment and QC

Length
1885 (17.6%)
# of SNPs
121

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C654T
  • G657A
  • G675A
  • T678C
  • A682G
  • T686C
  • G687A
  • T696C
  • A702G
  • A744G
  • T759C
  • T797C
  • C798T
  • T807A
  • A817G
  • C837T
  • G843A
  • C893T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:I46T
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:H149N
  • E:K160T
  • E:I164V
  • E:N203D
  • E:T226K
  • E:V347A
  • E:I379V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

prM

  • prM:E72S
  • prM:S81T
  • prM:Q82A
  • prM:D89E
  • prM:A96V
  • prM:L101M
  • prM:Q119H
  • prM:I120A
  • prM:K122R
  • prM:V123I
  • prM:A127V
  • prM:V135I
  • prM:I136M
  • prM:L138A
  • prM:F139I
  • prM:H142Y
  • prM:A143T
  • prM:S147T
Deletions
N/A
Insertions
N/A

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