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PPD_002UARG.1

Display Name: France/PPD_002UARG.1/2023-12-23
S. Fourati & M.-A. Rameix Welti

Submission details

Submission ID
PQ763054.1
Submitting group
Date submitted
2025-07-16 15:14:51 UTC
Date released
2025-07-16 15:36:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:15insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hospital Henri Mondor - APHP, Department of Virology

Alignment and QC metrics

Completeness
98.19%
Length
15173
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
217
Total unknown nucs
224

Sample details

Earliest release date
2024-12-18
Collection country
France
Collection date
2023-12-23
Collection date (lower bound)
2023-12-23
Collection date (upper bound)
2023-12-23
Isolate name
009-0029

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2024-12-18
NCBI update date
2024-12-18

Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • T922C
  • C952T
  • C964A
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:N135D
  • G:I141V
  • G:L142S
  • G:K154G
  • G:P222L
  • G:G224E
  • G:S243T
  • G:G254E
  • G:K262E
  • G:I265L
  • G:S270P
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1752T
  • L:S1789F
  • L:T1969I
  • L:Y2163N

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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