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PPD_002UCZY.1

Display Name: France/PPD_002UCZY.1/2024-01-05
S. Fourati & M.-A. Rameix Welti

Submission details

Submission ID
PQ763134.1
Submitting group
Date submitted
2025-07-16 15:14:51 UTC
Date released
2025-07-16 15:36:23 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-16 15:15insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Hospital Henri Mondor - APHP, Department of Virology

Alignment and QC metrics

Completeness
94.45%
Length
14949
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
201
Total unknown nucs
573

Sample details

Earliest release date
2024-12-18
Collection country
France
Collection date
2024-01-05
Collection date (lower bound)
2024-01-05
Collection date (upper bound)
2024-01-05
Isolate name
032-0020

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2024-12-18
NCBI update date
2024-12-18

Lineage

Lineage
A.D.5.1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • T66A
  • A67G
  • C90T
  • C183T
  • A327T
  • T375C
  • T697C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • C1047T
  • G1050A
  • A1051C
  • T1359C
  • G1368T
  • T1380C
  • G1383A
    • Deletions
    4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T122A

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:T136I
  • G:P206Q
  • G:K209R
  • G:T220I
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y297H
  • G:V303A

    • L

  • L:S141P
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:T1718I
  • L:N1723G
  • L:G1731D
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:T2I
  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:C45Y
    • Deletions
    None
    Insertions
    None

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