This is a preview deployment banner

PPD_002UH0S.1

DENV-2/Brazil/PPD_002UH0S.1/2020-01-22
R. S. Bezerra & S. N. Slavov

Universidade de Sao Paulo, Laboratorio de Biologia Molecular

Sample details

Collection date
2020-01-22
Sampling location
Brazil
Isolate name
RibeiraoPreto/2020(DENV-II)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-08-16
NCBI update date
2020-08-16

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT872516.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:31:15 UTC
Earliest release date
2020-08-16

Lineage & Serotype

Lineage
2III_C.1.1
Serotype
DENV-2

Alignment and QC

Length
1172 (10.9%)
# of SNPs
77

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • C483T
  • A486G
  • A489G
  • C508T
  • T513C
  • C528T
  • G531C
  • G555A
  • C579T
  • T603C
  • G609A
  • G612A
  • G618A
  • C633T
  • T648A
  • G651A
  • G657A
  • G675A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:V91I
  • E:R120T
  • E:V129I
  • E:I170T
  • E:N203D

prM

  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29D
  • prM:I37M
  • prM:M39I
  • prM:M49I
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:S81T
  • prM:Q82T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue