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PPD_002UH1Q.1

DENV-2/Brazil/PPD_002UH1Q.1/2020-01-22
R. S. Bezerra & S. N. Slavov

Universidade de Sao Paulo, Laboratorio de Biologia Molecular

Sample details

Collection date
2020-01-22
Sampling location
Brazil
Isolate name
RibeiraoPreto/2020(DENV-II)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2020-08-16
NCBI update date
2020-08-16

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MT872635.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:31:15 UTC
Earliest release date
2020-08-16

Lineage & Serotype

Lineage
2III_C.1.1
Serotype
DENV-2

Alignment and QC

Length
2234 (20.8%)
# of SNPs
153

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G111A
  • A122G
  • A125G
  • C126T
  • G168A
  • T201C
  • G213A
  • A219C
  • G246T
  • T258C
  • T292C
  • G294A
  • G297A
  • A309G
  • T312C
  • T330C
  • G387A
  • C393T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:N10S
  • C:S101T
  • C:M104V
  • C:I106V
  • C:V112A

E

  • E:M6I
  • E:V91I
  • E:R120T
  • E:V129I
  • E:I170T
  • E:N203D
  • E:V308I
  • E:M340T
  • E:S363A
  • E:I380V

prM

  • prM:G7N
  • prM:S15G
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29D
  • prM:I37M
  • prM:M39I
  • prM:M49I
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
Deletions
N/A
Insertions
N/A

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