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PPD_002USVS.1

DENV-3/Tanzania/PPD_002USVS.1/2020-01
I. S. Machelle, M. J. Msolla, B. L. Ngingo, L. E. Mboera, G. Mwanyika, S. Rugarabamu & G. Misinzo

Sokoine University of Agriculture, Veterinary Microbiology, Parasitology and Biotechnology

Sample details

Collection date
2020-01
Sampling location
Tanzania
Isolate name
DENV-3/TAN/Mikumi/2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-11-01
NCBI update date
2021-11-01

Host

Host
Host name - scientific
Aedes aegypti

Submission details

Submission ID
MW133786.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:33:16 UTC
Earliest release date
2021-11-01

Lineage & Serotype

Lineage
3III_B
Serotype
DENV-3

Alignment and QC

Length
511 (4.77%)
# of SNPs
11

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • A175T
  • C203T
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • C383A
  • T475C
  • T496A
  • C634T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

C

  • C:Q97K

prM

  • prM:T5S
  • prM:G7D
  • prM:H11R
  • prM:S15G
  • prM:Q17N
  • prM:S28A
  • prM:A29S
  • prM:V31I
  • prM:L44M
  • prM:E46D
  • prM:M49V
  • prM:R55H
  • prM:T59V
  • prM:D62E
  • prM:V64I
Deletions
N/A
Insertions
N/A

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