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PPD_002UXGE.1

DENV-1/China/PPD_002UXGE.1/2019-11-30
L. Zhao, L. Zhang, W. Hong, S. Qiu, J. Wang, H. Yang & F. Zhang

Guangzhou Eighth People's Hospital, Institute of infectious disease

Sample details

Collection date
2019-11-30
Sampling location
China
Isolate name
GZ8H/2019178/2019/I

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-03-01
NCBI update date
2021-03-01

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MW261836.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:33:16 UTC
Earliest release date
2021-03-01

Lineage & Serotype

Lineage
1IV_B.1
Serotype
DENV-1

Alignment and QC

Length
10679 (99.5%)
# of SNPs
346
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • A39G
  • T203C
  • A245G
  • G302A
  • A355G
  • G433A
  • C439T
  • A454G
  • G457A
  • G521A
  • C538T
  • T556C
  • A568G
  • C599A
  • A616G
  • C719T
  • T742C
  • C743T
Deletions

13
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

C

  • C:I51V
  • C:G70S

E

  • E:F96L
  • E:K203E
  • E:I293T
  • E:M297V
  • E:S338T
  • E:I378L
  • E:V485I

NS1

  • NS1:S94N
  • NS1:A98T
  • NS1:I123V
  • NS1:T131S
  • NS1:N146D
  • NS1:A213T
  • NS1:R214K
  • NS1:I224V
  • NS1:D278G
  • NS1:T307I

NS2A

  • NS2A:M33I
  • NS2A:T44I
  • NS2A:T148A

NS3

  • NS3:R33K
  • NS3:A91T
  • NS3:K216R
  • NS3:V323M
  • NS3:V332A

NS4A

  • NS4A:I89M

NS4B

  • NS4B:A18V

NS5

  • NS5:I181V
  • NS5:S629L
  • NS5:K647E
  • NS5:H649Y
  • NS5:T651I
  • NS5:F881Y

prM

  • prM:A29T
  • prM:K118R
Deletions
N/A
Insertions
N/A

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