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PPD_002V0MY.1
Download
Download FASTA
Download metadata TSV
DENV-1/China/20XN35991_D1/2020-07-12
L. Jiang,
Y. Cao &
W. Su
Guangzhou Center for Disease Control and Prevention, Derpartment of Virology and Immunity
Sample details
Collection date
2020-07-12
Sampling location
China (Guangzhou)
Isolate name
20XN35991_D1
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-11 17:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
MW295817.1
NCBI release date
2020-12-01
NCBI update date
2020-12-01
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
MW295817.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:34:16 UTC
Earliest release date
2020-12-01
Lineage & Serotype
Lineage
1III_A.3
Serotype
DENV-1
Alignment and QC
Length
10637 (99.3%)
# of SNPs
850
# of deleted bases
21
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
81
G
A
112
G
G
123
A
T
171
G
T
208
C
T
230
A
T
244
C
T
274
C
G
302
A
G
349
A
A
351
G
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
C
443
T
C
451
A
Show more
Deletions
10296-10311, 10318-10322
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
R
10
Q
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
K
86
R
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
F
337
I
E:
S
339
T
E:
K
343
E
E:
A
369
T
E:
V
380
I
E:
I
436
V
E:
I
439
V
NS1
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
M
103
T
NS1:
I
124
M
NS1:
D
127
E
NS1:
V
128
T
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
K
227
R
NS1:
D
278
N
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
I
15
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
V
114
A
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
L
199
F
NS2B
NS2B:
K
55
R
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
I
NS3:
A
112
M
NS3:
E
122
A
NS3:
R
185
K
NS3:
V
221
I
NS3:
V
384
I
NS3:
V
452
A
NS4A
NS4A:
Q
19
L
NS4A:
R
20
K
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
M
97
I
NS4B
NS4B:
H
17
Q
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS4B:
K
212
R
NS4B:
A
223
T
NS5
NS5:
I
34
M
NS5:
L
123
I
NS5:
Y
127
H
NS5:
K
130
R
NS5:
T
135
I
NS5:
A
245
T
NS5:
V
270
I
NS5:
K
364
R
NS5:
A
365
P
NS5:
R
378
K
NS5:
N
585
S
NS5:
A
616
V
NS5:
T
635
N
NS5:
P
636
S
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
I
873
V
NS5:
F
881
Y
NS5:
P
894
S
prM
prM:
T
59
A
prM:
E
72
D
prM:
K
118
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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