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PPD_002W6NN.1

DENV-2/USA/PPD_002W6NN.1/2020-10
P. L. Bulterys, M. Verghese, C. Huang, M. Sibai, D. A. Solis, M. K. Sahoo & B. A. Pinsky

Stanford University School of Medicine, Pathology

Sample details

Collection date
2020-10
Sampling location
USA
Isolate name
Stanford10/2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-01-17
NCBI update date
2021-01-17

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MW463888.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:38:18 UTC
Earliest release date
2021-01-17

Lineage & Serotype

Lineage
2II_F.1.1
Serotype
DENV-2

Alignment and QC

Length
1510 (14.1%)
# of SNPs
107

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • A817G
  • G843A
  • C880T
  • C885T
  • C893T
  • C921T
  • A922G
  • C945T
  • G954A
  • C993T
  • T1009C
  • A1011G
  • C1047T
  • A1077G
  • C1086G
  • G1092T
  • T1095C
  • C1101T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:I322V
  • E:N390S

prM

  • prM:A127V
  • prM:V135I
  • prM:I136M
  • prM:L138A
  • prM:F139I
  • prM:H142Y
  • prM:A143T
  • prM:S147T
  • prM:I148Y
  • prM:T149F
  • prM:K151R
  • prM:G152V
  • prM:I153L
  • prM:M159T
  • prM:L160A
  • prM:T162A
  • prM:A166T
Deletions
N/A
Insertions
N/A

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