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PPD_002X8W2.1

DENV-1/Laos/2020-17271/2020-09-21
E. Calvez, P. Bounmany, C. Baliere, S. Somlor, S. Viengphouthong, T. Xaybounsou, S. Keosenhom, K. Fangkham, P. T. Brey, V. Caro, V. Lacoste & M. Grandadam

Institut Pasteur du Laos, Arbovirus & Emerging viral diseases laboratory

Sample details

Collection date
2020-09-21
Sampling location
Laos (Vientiane Capital)
Isolate name
2020-17271

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-12-28
NCBI update date
2021-12-28

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MW559419.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:40:19 UTC
Earliest release date
2021-12-28

Lineage & Serotype

Lineage
1I_K.1.2
Serotype
DENV-1

Alignment and QC

Length
1485 (13.8%)
# of SNPs
119

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • C938A
  • G940A
  • A952T
  • A957G
  • A961G
  • T988A
  • G991T
  • G997A
  • A1006G
  • C1007T
  • G1012A
  • C1045T
  • C1055T
  • G1081A
  • T1083C
  • A1088G
  • C1135T
  • C1144T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

E

  • E:N8S
  • E:V50A
  • E:N52D
  • E:T88A
  • E:T155S
  • E:S171T
  • E:K203E
  • E:I293T
  • E:V324I
  • E:S339T
  • E:V380I
  • E:I436V
  • E:I461V
  • E:M484L
Deletions
N/A
Insertions
N/A

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