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PPD_002XG0M.1

DENV-3/Myanmar/YCH_D3_42_19consensus/2019-12
A. M. Soe, M. M. Ngwe Tun, T. Nabeshima, T. W. Myat, M. M. Htun, H. Lin, N. S. Hom, S. Inoue, K. M. Nwe, L. P. P. Aye, M. Fukuta, K. Z. Thant, F. Hasebe, K. Morita, S. Shresta, H. M. Thu & M. L. Moi

Institute of Tropical Medicine, Nagasaki Universoty, Department of Virology

Sample details

Collection date
2019-12
Sampling location
Myanmar (Yangon)
Isolate name
YCH_D3_42_19consensus

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-12-17
NCBI update date
2021-12-17

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MW788891.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:41:20 UTC
Earliest release date
2021-12-17

Lineage & Serotype

Lineage
3III_B.1
Serotype
DENV-3

Alignment and QC

Length
10641 (99.4%)
# of SNPs
440
# of inserted bases
1
# of deleted bases
5

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • G65A
  • A199G
  • C203T
  • T235C
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • A351G
  • C383A
  • T496A
  • C529T
  • T556C
  • C577T
  • A592G
  • C595T
  • T604C
Deletions

10278-10282
Insertions

ins_10436:A

Amino acid mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

2K

  • 2K:T20I

C

  • C:K86R
  • C:Q97K

E

  • E:P124L
  • E:A219T
  • E:S271T
  • E:I380T
  • E:E404A
  • E:A489V

NS1

  • NS1:L94I
  • NS1:A146T
  • NS1:L178M
  • NS1:K206R
  • NS1:T233S
  • NS1:S290N

NS2A

  • NS2A:L23M
  • NS2A:V127I
  • NS2A:T142I
  • NS2A:V150I
  • NS2A:S184T

NS2B

  • NS2B:P57A
  • NS2B:T128N

NS3

  • NS3:F31L
  • NS3:T112M
  • NS3:A310T
  • NS3:D392E

NS4A

  • NS4A:D36H
  • NS4A:V100I

NS4B

  • NS4B:V22I
  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y

NS5

  • NS5:V72I
  • NS5:T188A
  • NS5:A266V
  • NS5:D274E
  • NS5:K300R
  • NS5:A372V
  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:T629S
  • NS5:L639S
  • NS5:K656Q
  • NS5:E820D
  • NS5:P864S
  • NS5:E892N

prM

  • prM:T5S
  • prM:G7D
  • prM:H11R
  • prM:S15G
  • prM:Q17N
  • prM:S28A
  • prM:A29S
  • prM:V31I
  • prM:L44M
  • prM:E46D
  • prM:M49V
  • prM:R55H
  • prM:T59V
  • prM:D62E
  • prM:V64I
  • prM:A70L
  • prM:E72S
  • prM:S81N
Deletions
N/A
Insertions
N/A

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