This is a preview deployment banner

PPD_002XHFQ.1

DENV-4/Thailand/PDK48/2021-01
A. M. Bifani, M. M. Choy, H. C. Tan & E. E. Ooi

Duke-NUS Medical School, Program in Emerging Infectious Diseases

Sample details

Collection date
2021-01
Sampling location
Thailand
Isolate name
PDK48

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-11 17:30insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession
NCBI release date
2021-03-28
NCBI update date
2021-03-28

Host

Host
Host name - scientific
Homo sapiens

Submission details

Submission ID
MW793459.1
Submitting group
Date submitted
2026-03-11 17:28:14 UTC
Date released
2026-03-11 19:42:20 UTC
Earliest release date
2021-03-28

Lineage & Serotype

Lineage
4II_B
Serotype
DENV-4

Alignment and QC

Length
10648 (100%)
# of SNPs
117
# of deleted bases
1
# of ambiguous bases
3

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • G299A
  • A334G
  • T444C
  • C445A
  • C447T
  • C449G
  • A450T
  • G451C
  • C452A
  • C603T
  • C647T
  • C1004T
  • T1145C
  • G1184A
  • G1196A
  • T1211C
  • T1426C
  • C1559T
Deletions

10367
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

C

  • C:K78R

E

  • E:M163T
  • E:E345K
  • E:V364A

NS1

  • NS1:A6V
  • NS1:S109N
  • NS1:S152F
  • NS1:Q253H
  • NS1:T286A

NS2A

  • NS2A:Q138H

NS2B

  • NS2B:V74I

NS3

  • NS3:K14Q
  • NS3:P435T
  • NS3:E558K

NS4A

  • NS4A:L95F

NS4B

  • NS4B:L112S

NS5

  • NS5:I335V

prM

  • prM:T4S
  • prM:G7D
  • prM:H11L
  • prM:S15A
  • prM:Q17H
  • prM:K21R
  • prM:S22P
  • prM:S28T
  • prM:A29E
  • prM:V31I
  • prM:M33K
  • prM:L44M
  • prM:M49V
  • prM:R55L
  • prM:I56L
  • prM:T57V
  • prM:E58N
  • prM:D62E
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue