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PPD_002Y1MR.1

Display Name: USA/PPD_002Y1MR.1/2025-03-31
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-03-31
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-02659

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15045
# of SNPs
215
# of inserted bases
0
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
512
# of frame shifts
0
Completeness
95.46%

Submission details

Submission ID
PV545995.1
Submitting group
Date submitted
2025-09-17 10:55:50 UTC
Date released
2025-09-17 11:29:09 UTC
Earliest release date
2025-04-27

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C123T
  • C183T
  • G198A
  • A399G
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
  • A763G
  • T1035A
  • T1048C
  • G1050A
  • G1074A
  • A1305C
  • T1359C
  • C1472T
    • Deletions
    4005, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:L15F
  • F:A518V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:T200A
  • G:G224E
  • G:V225A
  • G:S243I
  • G:T252N
  • G:K262E
  • G:I265L
  • G:P276L
  • G:D284G
  • G:E286K
  • G:E295V
  • G:Y304H
  • G:L314P
  • G:T320A

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:Y598H
  • L:N839S
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:K1788R
  • L:S1789F
  • L:Y2163N

    • M

  • M:K25R
  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:T121I
  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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