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PPD_002Y1Y3.1

Display Name: USA/PPD_002Y1Y3.1/2025-03-30
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-03-30
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-02670

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15045
# of SNPs
232
# of inserted bases
1
# of deleted bases
3
# of ambiguous bases
1
# of unknown bases
291
# of frame shifts
0
Completeness
96.91%

Submission details

Submission ID
PV546006.1
Submitting group
Date submitted
2025-09-17 10:55:50 UTC
Date released
2025-09-17 11:29:09 UTC
Earliest release date
2025-04-27

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • A582G
  • G587T
  • C691T
  • G1034A
  • G1050A
  • G1077A
  • T1312C
  • T1326C
  • T1359C
  • G1368A
  • G1383A
  • A1386G
  • T1413A
  • T1422C
  • A1476C
  • G1719A
    • Deletions
    3214, 3215, 4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:L20F
  • F:S276N

    • G

  • G:P71L
  • G:H90Y
  • G:L101T
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:S250F
  • G:H258Q
  • G:K262E
  • G:E263K
  • G:I265L
  • G:H266L

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:G1550S
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:I48L
  • M2-2:T79A

    • N

  • N:E122D
  • N:V352A

    • P

  • P:L55P
  • P:V73I
  • P:Y79H
  • P:T92M
    • Deletions
    None
    Insertions
    None

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