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PPD_002Y6T8.1

Display Name: USA/PPD_002Y6T8.1/2025-04-04
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-04-04
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-02925

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15046
# of SNPs
212
# of inserted bases
0
# of deleted bases
1
# of ambiguous bases
1
# of unknown bases
1084
# of frame shifts
0
Completeness
91.70%

Submission details

Submission ID
PV629327.1
Submitting group
Date submitted
2025-09-17 10:55:50 UTC
Date released
2025-09-17 11:29:42 UTC
Earliest release date
2025-05-21

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • T246A
  • C379T
  • A399G
  • G587T
  • G1000A
  • C1012T
  • T1035A
  • C1046A
  • T1048C
  • G1050A
  • A1080G
  • A1110G
  • T1359C
  • G1662A
  • T1668C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:A116V
  • G:I134K
  • G:L142S
  • G:P143L
  • G:G224E
  • G:V225A
  • G:P234L
  • G:S243I
  • G:L247P
  • G:K262E
  • G:I265L
  • G:G272D
  • G:Y273H
  • G:P276S
  • G:D284G

    • L

  • L:R114K
  • L:N143D
  • L:P171L
  • L:T179S
  • L:S240N
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:I1656V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:N1748S
  • L:S1789F
  • L:Y2163N

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P
  • M2-1:T184A

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P
  • P:T72I

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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