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PPD_002Y98A.1

Display Name: USA/PPD_002Y98A.1/2025-04-16
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-04-16
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03068

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 10:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15045
# of SNPs
210
# of inserted bases
1
# of deleted bases
3
# of ambiguous bases
1
# of unknown bases
1311
# of frame shifts
0
Completeness
90.21%

Submission details

Submission ID
PV640322.1
Submitting group
Date submitted
2025-09-17 10:55:50 UTC
Date released
2025-09-17 11:29:42 UTC
Earliest release date
2025-05-21

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G587T
  • C691T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • G1368A
  • G1383A
  • A1386G
  • T1413A
  • T1422C
  • A1476C
  • G1719A
  • C1788T
  • C1806T
  • T1911C
    • Deletions
    3214, 3215, 4592
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:S276N

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:P234S
  • G:S243I
  • G:T246I
  • G:S250L
  • G:H258Q
  • G:K262E

    • L

  • L:P171L
  • L:S216N
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:I48L
  • M2-2:T79A

    • N

  • N:E122D
  • N:V352A

    • P

  • P:T92M
    • Deletions
    None
    Insertions
    None

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