This is the main branch

PPD_003373C.1

Display Name: USA/PPD_003373C.1/2025-05-06
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-05-06
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03173

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15140
Completeness
95.09%
# of SNPs
140
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
3
# of unknown bases
660
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496998.1
Submitting group
Date submitted
2025-11-25 14:55:13 UTC
Date released
2025-11-25 15:17:19 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T144C
  • G513T
  • G579A
  • C998A
  • C1114T
  • C1231T
  • G1385A
  • G1732A
  • T1846C
  • A2059G
  • C2074T
  • C2198T
  • G2504A
  • C2554T
  • A2649G
  • C2673T
  • C2691T
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:T14I
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:T70A
  • G:A74V
  • G:I79T
  • G:I87T
  • G:L91P
  • G:E97D
  • G:S100G
  • G:P214S
  • G:P221L
  • G:P235S
  • G:D251Y
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S307P

    • L

  • L:S173L
  • L:K570R
  • L:F1731L
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:Y30H

    • P

  • P:S67N

    • SH

  • SH:I49T
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue