This is the main branch

PPD_0033758.1

Display Name: USA/PPD_0033758.1/2025-05-08
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-05-08
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03175

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15140
Completeness
98.64%
# of SNPs
143
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
4
# of unknown bases
119
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX497000.1
Submitting group
Date submitted
2025-11-25 14:55:13 UTC
Date released
2025-11-25 15:17:19 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G341A
  • G513T
  • G579A
  • T808C
  • T835C
  • C998A
  • G1385A
  • T1451C
  • C1501T
  • G1519A
  • C1717T
  • G1732A
  • G1801A
  • T1846C
  • G1963A
  • C2074T
  • C2198T
  • C2554T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:K103N
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S295F

    • L

  • L:I445S
  • L:K570R
  • L:I737V
  • L:N839S
  • L:R1759K
  • L:E1835K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • SH

  • SH:I49M
  • SH:Y61H
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue