This is the main branch

PPD_00337SZ.1

Display Name: USA/PPD_00337SZ.1/2025-10-03
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-10-03
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03196

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:56insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.8

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15141
Completeness
96.90%
# of SNPs
152
# of inserted bases
5
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
387
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX497021.1
Submitting group
Date submitted
2025-11-25 14:55:13 UTC
Date released
2025-11-25 15:17:19 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • C578T
  • G579A
  • G599A
  • C998A
  • C1204T
  • G1385A
  • A1654G
  • A1729G
  • G1732A
  • T1846C
  • A2059T
  • C2074T
  • C2198T
  • C2554T
  • T2589C
  • C2691T
  • G3036C
    • Deletions
    975, 4586
    Insertions
    ins_3112:C, ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:N105S
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:I87T
  • G:P96S
  • G:S100G
  • G:H112Y
  • G:P214S
  • G:P221L
  • G:V249A
  • G:I252T
  • G:K256N
  • G:I268T
  • G:K276N
  • G:Y285H

    • L

  • L:N176S
  • L:S560P
  • L:K570R
  • L:R1547K
  • L:V1721I
  • L:R1759K
  • L:I1832V
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F
  • M2-2:N77S

    • N

  • N:V97I

    • NS2

  • NS2:D6N
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue