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PPD_003D0SL.1

Display Name: USA/PPD_003D0SL.1/2025-11-16
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels & S. Namugenyi

Sample details

Collection date
2025-11-16
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03298

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-10 16:17insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-12-23
NCBI update date
2025-12-23
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15138
Completeness
96.91%
# of SNPs
139
# of inserted bases
2
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
387
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX698308.1
Submitting group
Date submitted
2026-01-10 16:12:07 UTC
Date released
2026-01-10 17:22:25 UTC
Earliest release date
2025-12-23

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A276G
  • G513T
  • G579A
  • C589A
  • C628T
  • C998A
  • T1333C
  • G1385A
  • A1642G
  • A1643G
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • G2469T
  • C2521T
  • C2554T
  • C2691T
    • Deletions
    973, 4586
    Insertions
    ins_15092:AT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P
  • F:L467F

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:S283P
  • G:Y285H

    • L

  • L:K570R
  • L:N590S
  • L:S1736G
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I
  • N:I183V

    • NS1

  • NS1:K74E

    • NS2

  • NS2:S2R

    • P

  • P:P73S
    • Deletions
    None
    Insertions
    None

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