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PPD_003FXPR.1

Display Name: Ireland/PPD_003FXPR.1/2025-04-16
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Sample details

Collection date
2025-04-16
Country
Ireland

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 11:00insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15205
# of SNPs
131
# of inserted bases
4
# of deleted bases
2
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
99.88%

Submission details

Submission ID
OZ262351.1
Submitting group
Date submitted
2025-09-17 11:00:02 UTC
Date released
2025-09-17 11:05:49 UTC
Earliest release date
2025-06-03

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C43T
  • G513T
  • G579A
  • C598T
  • C998A
  • A1007C
  • G1385A
  • T1633A
  • G1732A
  • T1846C
  • C2074T
  • A2089G
  • C2198T
  • A2500G
  • C2554T
  • G2667A
  • C2691T
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:T139A
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:L270F
  • G:S275P
  • G:S283F
  • G:Y285H

    • L

  • L:S8G
  • L:K570R
  • L:R1759K
  • L:A1927V
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:F39L
  • M2-2:C49F
  • M2-2:D67G

    • N

  • N:V97I

    • P

  • P:T66A
    • Deletions
    None
    Insertions
    None

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