This is the main branch

PPD_003FXUF.1

Display Name: Ireland/PPD_003FXUF.1/2025-04-16
M. Carr, C. Bennett, W. Banka, L. Fahey, A. Rice, J. Dean, D. Hare & C. F. De Gascun

Sample details

Collection date
2025-04-16
Country
Ireland

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 11:00insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-06-03
NCBI update date
2025-06-04

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15205
# of SNPs
138
# of inserted bases
7
# of deleted bases
5
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
Completeness
99.88%

Submission details

Submission ID
OZ262356.1
Submitting group
Date submitted
2025-09-17 11:00:02 UTC
Date released
2025-09-17 11:05:49 UTC
Earliest release date
2025-06-03

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • G579A
  • C984T
  • C998A
  • T1250C
  • A1315G
  • A1336T
  • G1385A
  • G1648A
  • G1732A
  • T1846C
  • A1984G
  • C2074T
  • C2198T
  • T2406C
  • T2457C
  • C2521T
  • C2554T
    • Deletions
    973, 4586, 13501-13503
    Insertions
    ins_3204:GAA, ins_15092:ATAT

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P140L
  • G:N144D
  • G:P214S
  • G:P221L
  • G:I252T
  • G:S255P
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:Y125C
  • L:K570R
  • L:R1759K
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • P

  • P:P73S
    • Deletions
    L:1662
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue