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PPD_003GLYG.1

Display Name: USA/PPD_003GLYG.1/2022-12-19
P. Hemarajata, N. M. Green & J. M. Garrigues

Sample details

Collection date
2022-12-19
Country
USA
Isolate name
Monkeypox virus/Human/USA/CA-LACPHL-MA00401/2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-10 16:19insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
B.1.17

Authors

Author affiliations
Los Angeles County Public Health Laboratories, Los Angeles County Department of Public Health

INSDC

INSDC accession
NCBI release date
2023-01-26
NCBI update date
2023-08-22

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
194270
Completeness
79.54%
# of SNPs
56
# of inserted bases
39
# of deleted bases
111
# of ambiguous bases
3
# of unknown bases
37480
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
OQ331000.2
Submitting group
Date submitted
2026-01-10 16:04:44 UTC
Date released
2026-01-10 19:12:20 UTC
Earliest release date
2023-01-26

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G2591A
  • G3111A
  • C3818T
  • C7771T
  • G12169A
  • G14000T
  • A18769G
  • G21723A
  • C23564T
  • G25661A
  • T28175C
  • G30367A
  • G31053A
  • G34459A
  • G37202A
  • G38360A
  • C38662T
  • C39119T
    • Deletions
    39395-39397, 133177-133186, 179078-179175
    Insertions
    ins_133102:TTT, ins_173311:NNATATATATATATATATATATATATATATATATAT

    Amino acid mutations

    Mutations called relative to the NC_063383.1 reference

    Substitutions

    OPG002

  • OPG002:S54F

    • OPG003

  • OPG003:D264N

    • OPG025

  • OPG025:A423D

    • OPG047

  • OPG047:R48C

    • OPG053

  • OPG053:P78S

    • OPG056

  • OPG056:E125K

    • OPG057

  • OPG057:E353K

    • OPG071

  • OPG071:L108F

    • OPG092

  • OPG092:D196N

    • OPG093

  • OPG093:S30L

    • OPG094

  • OPG094:M142I

    • OPG098

  • OPG098:E162K

    • OPG105

  • OPG105:S734L

    • OPG118

  • OPG118:K606E

    • OPG136

  • OPG136:D98N

    • OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

    • OPG151

  • OPG151:C604R

    • OPG176

  • OPG176:H221Y

    • OPG193

  • OPG193:L263F

    • OPG210

  • OPG210:P722S
    • Deletions
    OPG057:267
    Insertions
    None

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