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PPD_003M6GJ.1

Display Name: USA/PPD_003M6GJ.1/2025-04-16
H. D. Kunerth, M. Plumb, S. Namugenyi, D. Evans, L. Bohnkers-Voels & A. Strain

Sample details

Collection date
2025-04-16
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVB-03113

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 11:00insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-05-21
NCBI update date
2025-05-21
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15139
# of SNPs
140
# of inserted bases
3
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
392
# of frame shifts
0
Completeness
96.87%

Submission details

Submission ID
PV640367.1
Submitting group
Date submitted
2025-09-17 11:00:02 UTC
Date released
2025-09-17 11:09:13 UTC
Earliest release date
2025-05-21

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A276G
  • G513T
  • G579A
  • C628T
  • T960C
  • C998A
  • G1059A
  • T1333C
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • T2490C
  • C2554T
  • C2691T
  • C2707T
  • C3000T
    • Deletions
    973, 4586
    Insertions
    ins_15089:ATA

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:D251N
  • G:I252T
  • G:K256N
  • G:T264A
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:N590S
  • L:R1759K
  • L:T1987I

    • M2-1

  • M2-1:T164S

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I

    • NS1

  • NS1:K74E
    • Deletions
    None
    Insertions
    None

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