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PPD_003MA8W.1

Display Name: China/PPD_003MA8W.1/2025-04-11
L. Shen, C. Wang, G. Hu, L. Kang & X. Wei

Sample details

Collection date
2025-04-11
Country
China
Admin level 1
Beijing
Isolate name
20250320SL

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 11:00insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

Authors

Author affiliations
Immunological Prevention, Beijing Center for Disease Prevetion and Control

INSDC

INSDC accession
NCBI release date
2025-08-02
NCBI update date
2025-08-02

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15188
# of SNPs
139
# of inserted bases
2
# of deleted bases
3
# of ambiguous bases
0
# of unknown bases
1
# of frame shifts
0
Completeness
99.78%

Submission details

Submission ID
PV973473.1
Submitting group
Date submitted
2025-09-17 11:00:02 UTC
Date released
2025-09-17 11:09:13 UTC
Earliest release date
2025-08-02

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A134G
  • G513T
  • G579A
  • C688T
  • C998A
  • G1385A
  • A1444G
  • C1694T
  • G1732A
  • T1846C
  • C2074T
  • C2146A
  • C2198T
  • T2529C
  • T2589C
  • C2796T
  • A2928G
  • G3036C
    • Deletions
    2, 3, 973
    Insertions
    ins_0:AC

    Amino acid mutations

    Mutations called relative to the OP975389.1 reference

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:S189N
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:R1759K
  • L:I1900V
  • L:V1965I
  • L:T1987I

    • M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None

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