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PPD_003T76R.1

Display Name: USA/PPD_003T76R.1/2025-05-02
H. Kunerth, M. Plumb, D. Evans, L. Bohnkers-Voels & S. Namugenyi

Sample details

Collection date
2025-05-02
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03132

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:59insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15047
Completeness
98.82%
# of SNPs
221
# of inserted bases
2
# of deleted bases
2
# of ambiguous bases
1
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496956.1
Submitting group
Date submitted
2025-11-25 14:58:19 UTC
Date released
2025-11-25 15:39:45 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • A312T
  • A399G
  • C528A
  • G551A
  • G555A
  • C598T
  • T659C
  • G664A
  • T697C
  • T922C
  • C952T
  • G1000A
  • C1012T
    • Deletions
    4174, 4592
    Insertions
    ins_3183:GA

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:L142S
  • G:T199A
  • G:G224E
  • G:S243I
  • G:G254E
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:L314P
  • G:T320A

    • L

  • L:A116S
  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1701H
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:Y1732N
  • L:S1789F
  • L:Y2163N

    • M

  • M:M43I

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N

    • N

  • N:V352A

    • P

  • P:L55P
  • P:S215P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None

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