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PPD_003T77P.1

Display Name: USA/PPD_003T77P.1/2025-05-05
H. Kunerth, M. Plumb, D. Evans, L. Bohnkers-Voels & S. Namugenyi

Sample details

Collection date
2025-05-05
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03133

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:59insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15048
Completeness
94.78%
# of SNPs
219
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
617
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496957.1
Submitting group
Date submitted
2025-11-25 14:58:19 UTC
Date released
2025-11-25 15:39:45 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • T106A
  • C183T
  • T372C
  • C379T
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • A1082G
  • A1197T
  • T1359C
  • T1413A
  • T1422C
  • T1767C
  • C1788T
  • C1806T
  • C2106T
    • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:T210A
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G
  • G:P298L

    • L

  • L:L48V
  • L:V164I
  • L:P171L
  • L:N176I
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:S1797F

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:T79A

    • N

  • N:V352A

    • NS1

  • NS1:L13M

    • P

  • P:L55P
  • P:T92M

    • SH

  • SH:V49A
    • Deletions
    None
    Insertions
    None

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