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PPD_003T7DB.1

Display Name: USA/PPD_003T7DB.1/2025-05-09
H. Kunerth, M. Plumb, D. Evans, L. Bohnkers-Voels & S. Namugenyi

Sample details

Collection date
2025-05-09
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03139

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:59insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.5.2

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
14854
Completeness
93.83%
# of SNPs
235
# of inserted bases
0
# of deleted bases
5
# of ambiguous bases
0
# of unknown bases
574
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496963.1
Submitting group
Date submitted
2025-11-25 14:58:19 UTC
Date released
2025-11-25 15:39:45 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • A135T
  • C183T
  • T246C
  • C408T
  • T533C
  • T697C
  • T922C
  • A940C
  • T1004C
  • A1009G
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
    • Deletions
    3190, 4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:A103T
  • F:T122A

    • G

  • G:W17R
  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:Q140R
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S283P
  • G:D284G
  • G:E295K
  • G:V303A

    • L

  • L:P171L
  • L:S224N
  • L:R256K
  • L:S552G
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:T1942I
  • L:V1943D

    • M

  • M:M73L

    • M2-1

  • M2-1:S176P

    • M2-2

  • M2-2:S16C
  • M2-2:S46N

    • N

  • N:I104V
  • N:V352A

    • P

  • P:L55P
  • P:T69I
    • Deletions
    None
    Insertions
    None

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