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PPD_003T7RL.1

Display Name: USA/PPD_003T7RL.1/2025-07-08
H. Kunerth, M. Plumb, D. Evans, L. Bohnkers-Voels & S. Namugenyi

Sample details

Collection date
2025-07-08
Country
USA
Admin level 1
Minnesota
Isolate name
MN-MDH-RSVA-03151

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 14:59insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.3

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2025-11-22
NCBI update date
2025-11-22
Raw reads accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
15051
Completeness
97.04%
# of SNPs
216
# of inserted bases
4
# of deleted bases
0
# of ambiguous bases
4
# of unknown bases
269
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
PX496975.1
Submitting group
Date submitted
2025-11-25 14:58:19 UTC
Date released
2025-11-25 15:39:45 UTC
Earliest release date
2025-11-22

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • T261C
  • C300T
  • A354G
  • A429T
  • T501C
  • T560C
  • G587T
  • C691T
  • G1034A
  • G1050A
  • G1077A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
    • Deletions
    None
    Insertions
    ins_3154:A, ins_3183:G, ins_15115:TT

    Amino acid mutations

    Mutations called relative to the PP109421.1 reference

    Substitutions

    F

  • F:T12I
  • F:V179I

    • G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:E271K
  • G:P274L
  • G:D284G
  • G:E308K

    • L

  • L:H170Q
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1734M

    • M2-1

  • M2-1:P120L
  • M2-1:S176P

    • M2-2

  • M2-2:Y26C
  • M2-2:S46N
  • M2-2:H47Y
  • M2-2:T79A

    • N

  • N:V352A

    • P

  • P:L55P
  • P:T92M
    • Deletions
    None
    Insertions
    None

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