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PPD_004AYBQ.1
Download
Download FASTA
Download metadata TSV
DENV-1/Brazil/48840/2022-03-17
C. T. Sacchi,
K. R. Campos,
M. B. Santos,
A. D. Reis &
A. F. Amarante
Instituto Adolfo Lutz, Laboratorio Estrategico
Sample details
Collection date
2022-03-17
Sampling location
Brazil (Sao Paulo, Zacarias)
Isolate name
48840
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-01 10:24
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
ON632041.1
NCBI release date
2022-08-23
NCBI update date
2022-08-23
Host
Host
human (Homo sapiens)
Submission details
Submission ID
ON632041.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-01 10:18:54 UTC
Date released
2026-05-01 12:55:30 UTC
Earliest release date
2022-08-23
Lineage & Serotype
Lineage
1V_A
Serotype
DENV-1
Alignment and QC
Length
10451 (97.4%)
# of SNPs
828
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
244
C
C
253
T
T
274
C
G
302
A
G
349
A
A
352
G
A
355
G
A
363
G
G
379
A
T
397
C
G
434
A
G
436
C
C
443
T
C
448
T
C
451
A
G
466
A
C
469
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
C:
M
95
I
C:
A
114
T
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
A
180
T
E:
K
203
E
E:
I
293
T
E:
S
338
L
E:
S
339
T
E:
A
369
T
E:
W
391
C
E:
K
393
L
E:
V
428
L
E:
I
439
V
NS1
NS1:
S
94
N
NS1:
V
128
I
NS1:
N
139
D
NS1:
N
146
D
NS1:
Y
175
H
NS1:
V
178
M
NS1:
I
242
V
NS1:
N
293
Y
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
V
5
M
NS2A:
L
12
I
NS2A:
I
15
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
111
L
NS2A:
S
142
P
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
K
156
R
NS2A:
T
158
S
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
A
NS2A:
L
199
F
NS2B
NS2B:
L
4
I
NS2B:
A
70
T
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
S
171
A
NS3:
R
185
K
NS3:
V
221
I
NS3:
K
255
R
NS3:
V
332
A
NS3:
V
384
I
NS3:
D
437
E
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
M
NS4B
NS4B:
A
18
V
NS4B:
A
20
V
NS4B:
A
27
T
NS4B:
H
34
R
NS4B:
I
48
V
NS4B:
A
153
T
NS5
NS5:
R
30
K
NS5:
I
34
M
NS5:
Y
127
H
NS5:
K
364
R
NS5:
R
367
K
NS5:
R
378
K
NS5:
N
585
S
NS5:
A
616
V
NS5:
S
629
L
NS5:
E
640
K
NS5:
R
641
K
NS5:
K
647
E
NS5:
T
651
A
NS5:
D
834
E
NS5:
F
881
Y
prM
prM:
A
29
V
prM:
T
59
A
prM:
E
72
D
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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