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PPD_004CVWJ.1

Slovakia/PPD_004CVWJ.1/2026-03-10
T. Sladecek

Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

Sample details

Collection date
2026-03-10
Sampling location
Slovakia
Isolate name
RNA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1.8

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-04-08
NCBI update date
2026-04-09
Raw reads accession

Host

Host

Submission details

Submission ID
OZ455370.1
Submitting group
Date submitted
2026-04-11 16:31:53 UTC
Date released
2026-04-11 18:55:19 UTC
Earliest release date
2026-04-08

Alignment and QC

Length
14979 (96.2%)
# of SNPs
154
# of inserted bases
2
# of deleted bases
2
# of unknown bases
336

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • C578T
  • G579A
  • C998A
  • G1031A
  • C1204T
  • G1385A
  • A1654G
  • A1729G
  • G1732A
  • T1846C
  • C2074T
  • A2128G
  • C2198T
  • C2554T
  • C2691T
  • G3036C
  • G3050A
Deletions

975, 4586
Insertions

ins_3112:C, ins_3201:A

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:I87T
  • G:S100G
  • G:H112Y
  • G:H128Y
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:V249A
  • G:I252T
  • G:K256N
  • G:S275P
  • G:K276S
  • G:T278A
  • G:Y285H
  • G:T296A
  • G:E303K

L

  • L:N176S
  • L:S560P
  • L:K570R
  • L:V1721I
  • L:R1759K
  • L:I1832V
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
Deletions
N/A
Insertions
N/A

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