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PPD_004JPCE.1

USA/PPD_004JPCE.1/2026-02-24
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-24
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-03962

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-29
NCBI update date
2026-03-29
Raw reads accession

Host

Host

Submission details

Submission ID
PZ173800.1
Submitting group
Date submitted
2026-04-11 16:31:53 UTC
Date released
2026-04-11 19:45:46 UTC
Earliest release date
2026-03-29

Alignment and QC

Length
14627 (91%)
# of SNPs
139
# of deleted bases
2
# of unknown bases
779

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • G513T
  • G579A
  • C685T
  • T729C
  • T760C
  • T898C
  • C998A
  • T1171C
  • G1385A
  • G1732A
  • C1804T
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • A2841G
  • A2853G
Deletions

973, 4586
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P
  • F:T555A

G

  • G:A74V
  • G:S100G
  • G:P101S
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:K570R
  • L:R1759K
  • L:A1972V
  • L:T1987I

M2-2

  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:V49A

SH

  • SH:I49T
Deletions
N/A
Insertions
N/A

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