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PPD_004JQ03.1

USA/PPD_004JQ03.1/2026-02-24
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-24
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-03984

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-29
NCBI update date
2026-03-29
Raw reads accession

Host

Host

Submission details

Submission ID
PZ173822.1
Submitting group
Date submitted
2026-04-11 16:31:53 UTC
Date released
2026-04-11 19:45:46 UTC
Earliest release date
2026-03-29

Alignment and QC

Length
15141 (96.8%)
# of SNPs
162
# of inserted bases
4
# of deleted bases
1
# of unknown bases
401

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • C116T
  • G513T
  • C569T
  • G579A
  • C998A
  • T1118C
  • G1385A
  • C1701T
  • G1732A
  • T1846C
  • T1948A
  • C2074T
  • A2170G
  • C2198T
  • C2535T
  • C2554T
  • T2634C
  • G2667A
Deletions

4586
Insertions

ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:N371S
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S295T

L

  • L:M194I
  • L:K570R
  • L:G1250S
  • L:K1589R
  • L:R1759K
  • L:V1965I
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:N32S
  • M2-2:D35N
  • M2-2:N46D
  • M2-2:C49F

N

  • N:V97I
  • N:P202L

P

  • P:K208R
  • P:T219A
  • P:D225E

SH

  • SH:I49L
Deletions
N/A
Insertions
N/A

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