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PPD_004JR02.1

USA/PPD_004JR02.1/2026-02-27
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-27
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-29
NCBI update date
2026-03-29
Raw reads accession

Host

Host

Submission details

Submission ID
PZ173856.1
Submitting group
Date submitted
2026-04-11 16:31:53 UTC
Date released
2026-04-11 19:45:46 UTC
Earliest release date
2026-03-29

Alignment and QC

Length
15140 (95.2%)
# of SNPs
147
# of inserted bases
4
# of deleted bases
2
# of unknown bases
647

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T107C
  • A134G
  • A310G
  • A473G
  • G513T
  • G579A
  • A597G
  • G599A
  • G637A
  • C688T
  • T707C
  • G830A
  • C998A
  • G1025T
  • G1385A
  • G1732A
  • T1846C
  • C2074T
Deletions

973, 4586
Insertions

ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:R42K
  • F:L125I
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:T238I
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:K570R
  • L:R1759K
  • L:V1965I
  • L:T1987I
  • L:P2013S

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:N85S

NS2

  • NS2:N5S
  • NS2:D6N
  • NS2:M18I
  • NS2:E83K

P

  • P:T219A

SH

  • SH:I34T
Deletions
N/A
Insertions
N/A

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