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PPD_004JR10.1

USA/PPD_004JR10.1/2026-03-03
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-03-03
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.4.1.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-29
NCBI update date
2026-03-29
Raw reads accession

Host

Host

Submission details

Submission ID
PZ173857.1
Submitting group
Date submitted
2026-04-11 16:31:53 UTC
Date released
2026-04-11 19:45:46 UTC
Earliest release date
2026-03-29

Alignment and QC

Length
15146 (98.7%)
# of SNPs
144
# of inserted bases
10
# of deleted bases
2
# of unknown bases
118

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • A131G
  • T334C
  • T367C
  • A492G
  • C502T
  • G513T
  • G547A
  • G579A
  • A590G
  • C666T
  • G1385A
  • A1462G
  • T1555C
  • C1714A
  • G1732A
  • T1846C
  • T1882C
  • C2074T
Deletions

973, 4586
Insertions

ins_1058:AAATAA, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N

G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P150S
  • G:P214S
  • G:L217P
  • G:P221L
  • G:H257Y
  • G:R260K

L

  • L:K260R
  • L:I445V
  • L:K570R
  • L:N1662T
  • L:K1704N
  • L:E1738K
  • L:R1759K
  • L:I1834V
  • L:T1987I

M

  • M:T89I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:I93T
  • NS1:L104P

NS2

  • NS2:T3A
  • NS2:T28I

P

  • P:D229G
Deletions
N/A
Insertions
N/A

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