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PPD_004JVAC.1

USA/PPD_004JVAC.1/2026-03-10
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-03-10
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04293

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:41insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-30
NCBI update date
2026-03-30
Raw reads accession

Host

Host

Submission details

Submission ID
PZ191894.1
Submitting group
Date submitted
2026-04-11 16:41:24 UTC
Date released
2026-04-11 19:45:46 UTC
Earliest release date
2026-03-30

Alignment and QC

Length
14871 (91.6%)
# of SNPs
137
# of inserted bases
6
# of deleted bases
2
# of unknown bases
920

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T483C
  • G513T
  • G579A
  • A827G
  • C1018T
  • A1369G
  • G1385A
  • G1732A
  • G1768A
  • T1846C
  • T1921C
  • C2198T
  • C2521T
  • A2537C
  • C2554T
  • C2691T
  • A2832G
  • G3036C
Deletions

973, 4586
Insertions

ins_2284:AA, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12I
  • F:V103I
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:T216V
  • G:P221L
  • G:I252T
  • G:I268T
  • G:S275P
  • G:L284I
  • G:Y285H

L

  • L:S169P
  • L:K570R
  • L:N1662T
  • L:R1759K
  • L:T1987I
  • L:L2143F

M2-1

  • M2-1:I125V

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:T82A

P

  • P:P73S
  • P:N78T
Deletions
N/A
Insertions
N/A

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