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PPD_0059V80.1

Ireland/PPD_0059V80.1/2025-09
M. Carr, L. Fahey, B. Keogan, A. Rice, D. Hare & C. F. De Gascun

National Viral Reference Laboratory, University College Dublin, Ireland, Dublin, Co. Dublin

Sample details

Collection date
2025-09
Sampling location
Ireland
Isolate name
GIRL00064751

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-11 16:49insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-02-20
NCBI update date
2026-02-21

Host

Host

Submission details

Submission ID
OZ413599.1
Submitting group
Date submitted
2026-04-11 16:23:26 UTC
Date released
2026-04-11 20:15:26 UTC
Earliest release date
2026-02-20

Alignment and QC

Length
195382 (72.6%)
# of SNPs
72
# of inserted bases
1
# of deleted bases
10
# of unknown bases
52234

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G1262A
  • G2591A
  • G3522A
  • C3818T
  • G12690A
  • G14000T
  • G15428A
  • C20453T
  • G21723A
  • C22167T
  • C23564T
  • G25213A
  • G25661A
  • T28175C
  • G30367A
  • C31006T
  • G31053A
  • G34459A
Deletions

133177-133186
Insertions

ins_178048:T

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

  • OPG001:S105L

OPG002

  • OPG002:S54F

OPG003

  • OPG003:D264N

OPG023

  • OPG023:P71S

OPG025

  • OPG025:A423D

OPG040

  • OPG040:S89F

OPG047

  • OPG047:R48C

OPG053

  • OPG053:P78S

OPG056

  • OPG056:E125K

OPG057

  • OPG057:E353K

OPG071

  • OPG071:L108F

OPG072

  • OPG072:D56N

OPG092

  • OPG092:D196N

OPG093

  • OPG093:S30L
  • OPG093:D88N

OPG094

  • OPG094:M142I

OPG109

  • OPG109:H740Y

OPG118

  • OPG118:K606E

OPG120

  • OPG120:D151N

OPG136

  • OPG136:D98N

OPG139

  • OPG139:A17T

OPG145

  • OPG145:E62K
  • OPG145:E435K

OPG150

  • OPG150:S307L

OPG188

  • OPG188:E12K

OPG193

  • OPG193:L263F

OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
Deletions
N/A
Insertions
N/A

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